Sounds like the STVA fault is being detected after the automatic cold start adjustment cancels out a few seconds after start up.
Does the FI fault take less time to show on a warm start compared to a cold start?
If so I would be looking at assembly issues with the throttle / STVA. It shouldn't really have been touched for trans work, but you never know.
Take a good look at the eccentic actuator on the throttle bodies on the other side to the STVA actuator and see if anything looks "amiss" when starting from cold... take a video if not sure.
Does the FI fault take less time to show on a warm start compared to a cold start?
If so I would be looking at assembly issues with the throttle / STVA. It shouldn't really have been touched for trans work, but you never know.
Take a good look at the eccentic actuator on the throttle bodies on the other side to the STVA actuator and see if anything looks "amiss" when starting from cold... take a video if not sure.